Evaluating Strategies to Normalise Biological Replicates of Western Blot Data

Evaluating Strategies to Normalise Biological Replicates of Western Blot Data

Western blot data are widely used in quantitative applications such as statistical testing and mathematical modelling. To ensure accurate quantitation and comparability between experiments, Western blot replicates must be normalised, but it is unclear how the available methods affect statistical properties of the data. Here we evaluate three commonly used normalisation strategies: (i) by fixed ...

A Tool for Evaluating Strategies for Grouping of Biological Data

During the last decade an enormous amount of biological data has been generated and techniques and tools to analyze this data have been developed. Many of these tools use some form of grouping and are used in, for instance, data integration, data cleaning, prediction of protein functionality, and correlation of genes based on microarray data. A number of aspects influence the quality of the gro...

Understanding the Western Blot

Inquiries about various issues relating to Western blot (WB) testing are frequently posted to the Lyme disease discussion groups on the Internet. Among the most commonly asked questions are: What laboratory techniques are used to carry out the assay? What exactly is being measured? What is a “band”? How are the results interpreted? What are the CDC criteria for a “positive” test? Although some ...

A Defined Methodology for Reliable Quantification of Western Blot Data

Chemiluminescent western blotting has been in common practice for over three decades, but its use as a quantitative method for measuring the relative expression of the target proteins is still debatable. This is mainly due to the various steps, techniques, reagents, and detection methods that are used to obtain the associated data. In order to have confidence in densitometric data from western ...

The fallibility of HIV western blot.